-------------------------------- TargetMine -------------------------------- TargetMine is an integrated data warehouse system for target discovery based on the InterMine framework. See below for more details. Web site: https://targetmine.mizuguchilab.org/ Reference: Chen Y-A, Tripathi LP, Mizuguchi K (2011) TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery. PLoS ONE 6(3): e17844. doi:10.1371/journal.pone.0017844 -------------------------------- Installation -------------------------------- See the INSTALL file for installation instructions. -------------------------------- TargetMine Source Distribution -------------------------------- Copyright (C) 2011-2020 by The Mizuguchi Laboratory. TargetMine requires the InterMine library. A modified version of InterMine is included in this distribution. (See 'Customized InterMine Library' below for details. The three directories, bio, imbuild and intermine, contain the InterMine library.) -------------------------------- InterMine -------------------------------- A powerful open source data warehouse system. InterMine Documentation(http://intermine.readthedocs.org/en/latest/). Copyright (C) 2002-2020 FlyMine InterMine includes software developed by the Apache Software Foundation(http://www.apache.org/). -------------------------------- Licenses -------------------------------- TargetMine is licensed under the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. See LICENSE for licensing information. InterMine is an open source project distributed under the GNU Lesser General Public Licence. See LICENSE.intermine and LICENSE.intermine.LIBS for licensing information. -------------------------------- Customized InterMine Library -------------------------------- The following files were modified. bio/webapp/resources/webapp/WEB-INF/classDescriptions.properties bio/postprocess/main/src/org/intermine/bio/postprocess/PostProcessOperationsTask.java bio/webapp/src/org/intermine/bio/web/logic/CytoscapeNetworkDBQueryRunner.java bio/webapp/src/org/intermine/bio/web/logic/CytoscapeNetworkService.java bio/webapp/src/org/intermine/bio/web/logic/OrthologueConverter.java intermine/web/main/src/org/intermine/web/struts/BuildBagAction.java intermine/web/main/src/org/intermine/web/struts/BuildBagForm.java The following files were added. bio/postprocess/main/src/org/intermine/bio/postprocess/AssociateGeneAndIPC.java bio/postprocess/main/src/org/intermine/bio/postprocess/CalculateBioThemeBackground.java bio/postprocess/main/src/org/intermine/bio/postprocess/HierarchicalClustering.java bio/postprocess/main/src/org/intermine/bio/postprocess/IntegratedPathwayClustering.java bio/postprocess/main/src/org/intermine/bio/postprocess/NetworkAnalysisTool.java bio/postprocess/main/src/org/intermine/bio/postprocess/PpiDruggability.java bio/postprocess/main/src/org/intermine/bio/postprocess/TranscribeNcbiGeneId.java bio/webapp/src/org/intermine/bio/web/logic/ProteinOrthologConverter.java