Enrichment analysis is a commonly used approach to identify the relevant biological themes. Using the InterMine/TargetMine APIs, you can upload a list and then retrieve the enrichment analysis results from the widget of the list. To do this, you need an account and the API Access Key to upload a list first.
To simply the procedure, we provide an alternative API for the ‘Enrichment Analysis’. You can get the explanation for the API by accessing
https://targetmine.mizuguchilab.org/pipeline/analysis/enrichment without any arguments.
Here is an example:
https://targetmine.mizuguchilab.org/pipeline/analysis/enrichment?theme=Pathway&dataSet=KEGG+Pathway&taxonId=9606&cutOff=0.001&list=1080,125,217,2944,2947,2950,2952,3105,3106,3107,3115,3119,3123,3265,3304,3458,3586,3856,4257,5444,54576,54577,54578,54658,5644,6648,6690,7040,7124,847,929&showBg=true
Invoking a HTTP request for the URL above will return you the enrichment analysis results in a tab delimited table.
At the moment, the API only supports the input as a list of genes.
To convert your protein list or probe set list to a gene list, you can consider trying the following service.
https://targetmine.mizuguchilab.org/pipeline/analysis/convert
