References

Citation

If you use TargetMine, please cite 

The TargetMine Data Warehouse: Enhancement and Updates.
Chen Y-A, Tripathi LP, Fujiwara T, Kameyama T, Itoh MN, Mizuguchi K.
Frontiers in Genetics. 2019 Oct 9;10:934
doi pubmed

 

Here are some other references for TargetMine.

Research articles

Assessing drug target suitability using TargetMine.
Chen Y-A, Yogo E, Kurihara N, Ohno T, Higuchi C, Rokushima M, Mizuguchi K.
F1000Research. 2019 Feb 28 [revised 2019 May 28];8:233
doi pubmed

An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework.
Chen Y-A, Tripathi LP, Mizuguchi K.
Database (Oxford). 2016 Mar 17;2016. pii: baw009
doi pubmed

Integrated pathway clusters with coherent biological themes for target prioritisation.
Chen Y-A, Tripathi LP, Dessailly BH, Nyström-Persson J, Ahmad S, Mizuguchi K.
PLoS ONE. 2014 Jun 11;9(6):e99030.
doi pubmed

TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery.
Chen Y-A, Tripathi LP, Mizuguchi K.
PLoS ONE. 2011 Mar 8;6(3): e17844
doi pubmed

 

Reviews and Book chapters

Data Warehousing with TargetMine for Omics Data Analysis.
Chen Y-A, Tripathi LP, Mizuguchi K.
Methods in Molecular Biology. 2019;1986:35-64
doi pubmed

Integrative Analysis of Multi-Omics Data
Tripathi LP, Esaki T, Itoh MN, Chen Y-A, Mizuguchi K.
Encyclopedia of Bioinformatics and Computational Biology. 2018 Sep 6;Volume 3, Page 194-199
doi

Network-Based Analysis for Biological Discovery
Tripathi LP, Chen Y-A, Mizuguchi K, Murakami Y.
Encyclopedia of Bioinformatics and Computational Biology. 2018 Sep 6;Volume 3, Page 283-291
doi

Network-Based Analysis of Host-Pathogen Interactions
Tripathi LP, Chen Y-A, Mizuguchi K, Morita E.
Encyclopedia of Bioinformatics and Computational Biology. 2018 Sep 6;Volume 3, Page 932-937
doi

 

Applications

Please reference to the following page.

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